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staphb/artic:1.10.0

Index digest

sha256:876f58fe560c6a5b152c444687ee14bc95489cd099845b743abc5d2030a1bd69

OS/ARCH

linux/amd64

Compressed size

1.36 GB

Last pushed

5 months by staphbadmin

Type

Image

Manifest digest

sha256:3f303ea291d93f2dcc5fbe6eb8d517ab674bcd6fcd6bde4850c310caf5c4e87f

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=24.040 B
5ADD file ... in / 28.35 MB
6CMD ["/bin/bash"]0 B
7ARG CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt0 B
8ARG MAMBA_USER=mambauser0 B
9ARG MAMBA_USER_ID=574390 B
10ARG MAMBA_USER_GID=574390 B
11ENV MAMBA_USER=mambauser0 B
12ENV MAMBA_USER_ID=574390 B
13ENV MAMBA_USER_GID=574390 B
14ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
15ENV ENV_NAME=base0 B
16ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
17ENV MAMBA_EXE=/bin/micromamba0 B
18ENV CONDA_OVERRIDE_CUDA=0 B
19COPY /bin/micromamba /bin/micromamba # buildkit7.03 MB
20COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit123.59 KB
21COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit552 B
22COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit284 B
23RUN |4 CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt MAMBA_USER=mambauser MAMBA_USER_ID=574393.98 KB
24USER mambauser0 B
25WORKDIR /tmp32 B
26COPY _apptainer_shell.sh /usr/local/bin/_apptainer_shell.sh # buildkit216 B
27COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit704 B
28COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit657 B
29ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
30CMD ["/bin/bash"]0 B
31COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit348 B
32SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
33ARG ARTIC_VER=1.10.00 B
34LABEL base.image=mambaorg/micromamba:2.5.0-ubuntu24.040 B
35LABEL dockerfile.version=10 B
36LABEL software=artic0 B
37LABEL software.version=1.10.00 B
38LABEL description=A bioinformatics pipeline for0 B
39LABEL website=https://github.com/artic-network/fieldbioinformatics0 B
40LABEL license=https://github.com/artic-network/fieldbioinformatics/blob/master/LICENSE0 B
41LABEL sop=https://artic.network/fieldbioinformatics/fieldbioinformatics-sop.html0 B
42LABEL maintainer=Erin Young0 B
43LABEL [email protected]0 B
44LABEL maintainer2=Raheel Ahmed0 B
45LABEL [email protected]0 B
46USER root0 B
47WORKDIR /0 B
48RUN |1 ARTIC_VER=1.10.0 /usr/local/bin/_dockerfile_shell.sh micromamba856.7 MB
49ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/envs/artic/bin/ CONDA_PREFIX=/opt/conda/envs/artic/ LC_ALL=C.UTF-80 B
50RUN |1 ARTIC_VER=1.10.0 /usr/local/bin/_dockerfile_shell.sh artic_get_models501.85 MB
51CMD ["artic" "--help"]0 B
52WORKDIR /data32 B

Command

 ARG RELEASE